PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 223aa    MW: 23300.7 Da    PI: 6.2705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108077.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-06119140223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C+ C+k+F ++  L  H+r+H
  XP_010108077.1 119 TCSVCSKVFASWKALFGHMRSH 140
                     6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0034118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078118145IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-5119147No hitNo description
PfamPF139128.8E-9120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKKNGDAPTN KSPTKKQAPT TQPRRDESEN SNVAAIGGPS LIINRQSAPT SSPFLPLSLR  60
AQGATTGGGA PGIGSGVIAS TAVAGGGIQV ESTSEVPPSG SRPLKRKSEV SAPEGVVPTC  120
SVCSKVFASW KALFGHMRSH PERQWRGCFP PPVAQQQLSR AGDHQAAFAE SGGGNTQRRE  180
ELDIDLNRPQ EGNFGAPTDQ TKNDDGGFDL NMPPMPDDDD DAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108077.11e-163Zinc finger protein ZAT3
TrEMBLW9SMY31e-163W9SMY3_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-12C2H2-like zinc finger protein